Transcript: lnc-CCDC28A-1:13

Basic information

LNCipedia transcript ID: lnc-CCDC28A-1:13 
LNCipedia gene ID: lnc-CCDC28A-1
Location (hg38): chr6:138691708-138696962
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 770 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000225177.1|FTMT22300040560.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -166.6101 non-coding 
CPAT coding probability 1.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC28A-1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CCDC28A-1:13
5.0 lnc-CCDC28A-1:13
5.1 lnc-GJE1-28:5
5.2 lnc-CCDC28A-1:13