Transcript: lnc-CCDC189-1:6

Basic information

LNCipedia transcript ID: lnc-CCDC189-1:6 
LNCipedia gene ID: lnc-CCDC189-1
Ensembl Gene ID: ENSG00000261840
Ensembl Transcript ID: ENST00000564775
Location (hg38): chr16:30697707-30698961
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 306 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564775.2
Alternative gene names: ENSG00000261840.2; RP11-146F11.1; AC093249.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -277.0031 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC189-1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C16orf93-1:4
4.1 lnc-C16orf93-1:4
5.0 lnc-C16orf93-1:4
5.1 lnc-SULT1A2-92:6
5.2 lnc-CCDC189-1:6