Transcript: lnc-CCDC187-1:38

Basic information

LNCipedia transcript ID: lnc-CCDC187-1:38 
LNCipedia gene ID: lnc-CCDC187-1
Location (hg38): chr9:136249971-136251205
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1235 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000584807.2
Alternative gene names: ENSG00000264527.2; WI2-1959D15.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -81.9403 non-coding 
CPAT coding probability 1.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC187-1:38 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-QSOX2-1:19
4.1 lnc-QSOX2-1:19
5.0 lnc-QSOX2-1:19
5.1 lnc-CCDC187-1:19
5.2 lnc-CCDC187-1:38