Transcript: lnc-CCDC179-1:6

Basic information

LNCipedia transcript ID: lnc-CCDC179-1:6 
LNCipedia gene ID: lnc-CCDC179-1
Location (hg38): chr11:22847357-22860426
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 365 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000532798
Alternative gene names: ENSG00000255359; RP11-17A1.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 134.8265 coding 
CPAT coding probability 3.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCDC179-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-17A1.2.1-1:6
3.1 lnc-RP11-17A1.2.1-1:6
4.0 lnc-RP11-17A1.2.1-1:6
4.1 lnc-RP11-17A1.2.1-1:6
5.0 lnc-RP11-17A1.2.1-1:6
5.1 lnc-TPH1-34:6
5.2 lnc-CCDC179-1:6