Transcript: lnc-CCDC179-1:4

Basic information

LNCipedia transcript ID: lnc-CCDC179-1:4 
LNCipedia gene ID: lnc-CCDC179-1
Location (hg38): chr11:22849918-22860511
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 499 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020051; NONHSAT018416
Alternative gene names: XLOC_009393; linc-SVIP


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 99.7448 coding 
CPAT coding probability 6.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCDC179-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-17A1.2.1-1:4
3.1 lnc-RP11-17A1.2.1-1:4
4.0 lnc-RP11-17A1.2.1-1:4
4.1 lnc-RP11-17A1.2.1-1:4
5.0 lnc-RP11-17A1.2.1-1:4
5.1 lnc-TPH1-34:4
5.2 lnc-CCDC179-1:4