Transcript: lnc-CCDC179-1:2

Basic information

LNCipedia transcript ID: lnc-CCDC179-1:2 
LNCipedia gene ID: lnc-CCDC179-1
Location (hg38): chr11:22847277-22860519
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 639 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020048; NONHSAT018413
Alternative gene names: XLOC_009393; linc-SVIP


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.0018 non-coding 
CPAT coding probability 14.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC179-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-17A1.2.1-1:2
3.1 lnc-RP11-17A1.2.1-1:2
4.0 lnc-RP11-17A1.2.1-1:2
4.1 lnc-RP11-17A1.2.1-1:2
5.0 lnc-RP11-17A1.2.1-1:2
5.1 lnc-TPH1-34:2
5.2 lnc-CCDC179-1:2