Transcript: lnc-CCDC172-1:1

Basic information

LNCipedia transcript ID: lnc-CCDC172-1:1 
LNCipedia gene ID: lnc-CCDC172-1
Location (hg38): chr10:116274267-116279803
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1948 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000116526.1|MICT00000049076.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1.3595 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC172-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C10orf96-1:4
5.0 lnc-C10orf96-1:4
5.1 lnc-VTI1A-38:1
5.2 lnc-CCDC172-1:1