Transcript: lnc-CCDC127-1:1

Basic information

LNCipedia transcript ID: lnc-CCDC127-1:1 
LNCipedia gene ID: lnc-CCDC127-1
Ensembl Gene ID: ENSG00000248925
Ensembl Transcript ID: ENST00000512642
Location (hg38): chr5:269858-271516
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 522 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009573; ENST00000512642.1; CTD-2083E4.6-001; OTTHUMT00000365461.1
Alternative gene names: XLOC_004692; linc-CCDC127; ENSG00000248925.1; CTD-2083E4.6; OTTHUMG00000161587.1; AC021087.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.999 non-coding 
CPAT coding probability 2.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC127-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC127-1:1
3.1 lnc-CCDC127-1:1
4.0 lnc-CCDC127-1:1
4.1 lnc-CCDC127-1:1
5.0 lnc-CCDC127-1:1
5.1 lnc-IRX2-56:2
5.2 lnc-CCDC127-1:1