Transcript: lnc-CCDC117-1:15

Basic information

LNCipedia transcript ID: lnc-CCDC117-1:15 
LNCipedia gene ID: lnc-CCDC117-1
Location (hg38): chr22:28818300-28822215
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 440 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000226471.2|ENST00000422972.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -188.147 non-coding 
CPAT coding probability 2.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC117-1:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CCDC117-1:15
5.0 lnc-CCDC117-1:15
5.1 lnc-OSBP2-35:12
5.2 lnc-CCDC117-1:15