Transcript: lnc-CCDC114-1:2

Basic information

LNCipedia transcript ID: lnc-CCDC114-1:2 
LNCipedia gene ID: lnc-CCDC114-1
Location (hg38): chr19:48304081-48321894
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 522 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000504608.1; CTC-241F20.2-001; OTTHUMT00000343206.1; NONHSAT067056
Alternative gene names: ENSG00000248146.1; CTC-241F20.2; OTTHUMG00000156160.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 100.8043 coding 
CPAT coding probability 1.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCDC114-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC114-1:2
4.0 lnc-CCDC114-1:2
4.1 lnc-CCDC114-1:2
5.0 lnc-CCDC114-1:2
5.1 lnc-CCDC114-1:2
5.2 lnc-CCDC114-1:2