Transcript: lnc-CBSL-1:2

Basic information

LNCipedia transcript ID: lnc-CBSL-1:2 
LNCipedia gene ID: lnc-CBSL-1
Ensembl Gene ID: ENSG00000280179
Ensembl Transcript ID: ENST00000623297
Location (hg38): chr21:6084364-6088242
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3013 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623297.1
Alternative gene names: ENSG00000280179.1; CH507-42P11.6; PRED49; FLJ38036; CU639417.6; CU639417.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -47.6672 non-coding 
CPAT coding probability 49.81% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CBSL-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00319:5
4.1 LINC00319:5
5.0 LINC00319:5
5.1 lnc-N6AMT1-166:2
5.2 lnc-CBSL-1:2