Transcript: lnc-CAST-1:1

Basic information

LNCipedia transcript ID: lnc-CAST-1:1 
LNCipedia gene ID: lnc-CAST-1
Location (hg38): chr5:96525267-96546518
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 557 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00009466; ENST00000509602.1; RP11-432G16.1-001; OTTHUMT00000370579.1; NONHSAT102894
Alternative gene names: XLOC_004480; linc-CAST-1; ENSG00000249880.1; RP11-432G16.1; OTTHUMG00000162826.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.3384 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CAST-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CAST-1:1
3.1 lnc-CAST-1:1
4.0 lnc-CAST-1:1
4.1 lnc-CAST-1:1
5.0 lnc-CAST-1:1
5.1 lnc-GPR150-21:1
5.2 lnc-CAST-1:1