Transcript: lnc-CAPZA2-2:13

Basic information

LNCipedia transcript ID: lnc-CAPZA2-2:13 
LNCipedia gene ID: lnc-CAPZA2-2
Ensembl Gene ID: ENSG00000214188
Ensembl Transcript ID: ENST00000597499
Location (hg38): chr7:116956650-116957122
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 473 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000597499.1
Alternative gene names: ENSG00000214188.9; ST7-OT4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -125.5489 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CAPZA2-2:13 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ST7-OT4-2:7
4.1 lnc-ST7-OT4-2:7
5.0 lnc-ST7-OT4-2:7
5.1 lnc-MET-2:7
5.2 lnc-CAPZA2-2:13