Transcript: lnc-CAPZA2-2:11

Basic information

LNCipedia transcript ID: lnc-CAPZA2-2:11 
LNCipedia gene ID: lnc-CAPZA2-2
Ensembl Gene ID: ENSG00000214188
Ensembl Transcript ID: ENST00000470996
Location (hg38): chr7:116954620-116968574
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 416 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT122918; ENST00000470996.4
Alternative gene names: ENSG00000214188.9; ST7-OT4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.2806 non-coding 
CPAT coding probability 1.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CAPZA2-2:11 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CAPZA2-2:4
4.0 lnc-ST7-OT4-2:5
4.1 lnc-ST7-OT4-2:5
5.0 lnc-ST7-OT4-2:5
5.1 lnc-MET-2:5
5.2 lnc-CAPZA2-2:11