Transcript: lnc-CAPRIN2-2:2

Basic information

LNCipedia transcript ID: lnc-CAPRIN2-2:2 
LNCipedia gene ID: lnc-CAPRIN2-2
Location (hg38): chr12:30997254-31005986
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 558 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000418254; ENST00000418254.2; RP11-551L14.4-003; OTTHUMT00000399890.1; NONHSAT027527
Alternative gene names: ENSG00000226472; RP11-551L14.4; ENSG00000226472.3; OTTHUMG00000168485.1; ENSG00000226472.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.838 non-coding 
CPAT coding probability 2.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CAPRIN2-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CAPRIN2-2:2
3.1 lnc-CAPRIN2-2:2
4.0 lnc-CAPRIN2-2:2
4.1 lnc-CAPRIN2-2:2
5.0 lnc-CAPRIN2-2:2
5.1 lnc-WBP11-131:9
5.2 lnc-CAPRIN2-2:2