Transcript: lnc-CALM1-3:1

Basic information

LNCipedia transcript ID: lnc-CALM1-3:1 
LNCipedia gene ID: lnc-CALM1-3
Ensembl Gene ID: ENSG00000258935
Ensembl Transcript ID: ENST00000557622
Location (hg38): chr14:90567495-90569976
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 559 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000557622; ENST00000557622.1; RP11-1078H9.2-001; OTTHUMT00000411378.1; NONHSAT039242
Alternative gene names: ENSG00000258935; RP11-1078H9.2; ENSG00000258935.1; OTTHUMG00000171048.1; AL096869.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.358 non-coding 
CPAT coding probability 0.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CALM1-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CALM1-3:1
3.1 lnc-CALM1-3:1
4.0 lnc-CALM1-3:1
4.1 lnc-CALM1-3:1
5.0 lnc-CALM1-3:1
5.1 lnc-SPATA7-29:1
5.2 lnc-CALM1-3:1