Transcript: lnc-CADM1-11:1

Basic information

LNCipedia transcript ID: lnc-CADM1-11:1 
LNCipedia gene ID: lnc-CADM1-11
Location (hg38): chr11:115951105-115951491
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 387 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT024332
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
FPGYDSESK 100% sense-1
Lee translation initiation sites 0 non-coding 
PhyloCSF score 41.6584 non-coding 
CPAT coding probability 2.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CADM1-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CADM1-11:1
4.0 lnc-CADM1-11:1
4.1 lnc-CADM1-11:1
5.0 lnc-CADM1-11:1
5.1 lnc-SCN4B-46:1
5.2 lnc-CADM1-11:1