Transcript: lnc-CACNG5-1:1

Basic information

LNCipedia transcript ID: lnc-CACNG5-1:1 
LNCipedia gene ID: lnc-CACNG5-1
Ensembl Gene ID: ENSG00000229330
Ensembl Transcript ID: ENST00000457168
Location (hg38): chr17:66676372-66677404
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 484 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457168.2; AC006947.1-001; OTTHUMT00000255410.2; NONHSAT055394
Alternative gene names: ENSG00000229330.2; AC006947.1; OTTHUMG00000132305.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.8227 non-coding 
CPAT coding probability 14.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CACNG5-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CACNG5-1:1
4.0 lnc-CACNG5-1:1
4.1 lnc-CACNG5-1:1
5.0 lnc-CACNG5-1:1
5.1 lnc-TANC2-81:1
5.2 lnc-CACNG5-1:1