Transcript: lnc-CACNA1A-1:4

Basic information

LNCipedia transcript ID: lnc-CACNA1A-1:4 
LNCipedia gene ID: lnc-CACNA1A-1
Location (hg38): chr19:13671056-13672724
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 928 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00027685; NONHSAT061347
Alternative gene names: XLOC_013238; linc-CACNA1A-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.0718 non-coding 
CPAT coding probability 10.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CACNA1A-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC008686.1-1:3
3.1 lnc-AC008686.1-1:3
4.0 lnc-AC008686.1-1:3
4.1 lnc-AC008686.1-1:3
5.0 lnc-AC008686.1-1:3
5.1 lnc-PALM3-23:3
5.2 lnc-CACNA1A-1:4