Transcript: lnc-CAB39L-8:3

Basic information

LNCipedia transcript ID: lnc-CAB39L-8:3 
LNCipedia gene ID: lnc-CAB39L-8
Location (hg38): chr13:48914425-48914986
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 562 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: predAs_ge08_RFP2_4
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.7806 non-coding 
CPAT coding probability 0.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CAB39L-8:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RCBTB2-8:1
4.0 lnc-RCBTB2-8:1
4.1 lnc-CAB39L-8:3
5.0 lnc-CAB39L-8:3
5.1 lnc-CCDC169-146:3
5.2 lnc-CAB39L-8:3