Transcript: lnc-C9orf50-5:1

Basic information

LNCipedia transcript ID: lnc-C9orf50-5:1 
LNCipedia gene ID: lnc-C9orf50-5
Location (hg38): chr9:129411260-129413459
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2025 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016488; NONHSAT135060
Alternative gene names: XLOC_007866; linc-IER5L-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.2804 non-coding 
CPAT coding probability 73.13% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-C9orf50-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf50-4:1
3.1 lnc-C9orf50-5:1
4.0 lnc-C9orf50-5:1
4.1 lnc-C9orf50-5:1
5.0 lnc-C9orf50-5:1
5.1 lnc-SPOUT1-23:1
5.2 lnc-C9orf50-5:1