Transcript: lnc-C9orf50-1:3

Basic information

LNCipedia transcript ID: lnc-C9orf50-1:3 
LNCipedia gene ID: lnc-C9orf50-1
Location (hg38): chr9:129559521-129568828
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2030 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000109916.1|MICT00000367533.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 26.4986 non-coding 
CPAT coding probability 2.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C9orf50-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C9orf50-1:3
5.0 lnc-C9orf50-1:3
5.1 lnc-SPOUT1-30:1
5.2 lnc-C9orf50-1:3