Transcript: lnc-C5orf49-2:6

Basic information

LNCipedia transcript ID: lnc-C5orf49-2:6 
LNCipedia gene ID: lnc-C5orf49-2
Ensembl Gene ID: ENSG00000249638
Ensembl Transcript ID: ENST00000504765
Location (hg38): chr5:7362979-7364531
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 407 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009599; ENST00000504765; ENST00000504765.1; CTD-2296D1.3-001; OTTHUMT00000366325.1; NONHSAT100250
Alternative gene names: XLOC_004727; linc-NSUN2-1; ENSG00000249638; CTD-2296D1.3; ENSG00000249638.1; OTTHUMG00000161899.1; AC027343.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.1969 non-coding 
CPAT coding probability 0.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C5orf49-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf49-1:6
3.1 lnc-C5orf49-2:6
4.0 lnc-C5orf49-2:6
4.1 lnc-C5orf49-2:6
5.0 lnc-C5orf49-2:6
5.1 lnc-IRX2-82:7
5.2 lnc-C5orf49-2:6