Transcript: lnc-C5orf38-4:2

Basic information

LNCipedia transcript ID: lnc-C5orf38-4:2 
LNCipedia gene ID: lnc-C5orf38-4
Location (hg38): chr5:3036675-3043017
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1366 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009847; NONHSAT100113
Alternative gene names: XLOC_004258; linc-IRX1-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.4071 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C5orf38-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf38-4:2
3.1 lnc-C5orf38-4:2
4.0 lnc-C5orf38-4:2
4.1 lnc-C5orf38-4:2
5.0 lnc-C5orf38-4:2
5.1 lnc-CARD6-349:3
5.2 lnc-C5orf38-4:2