Transcript: lnc-C2CD4B-13:3

Basic information

LNCipedia transcript ID: lnc-C2CD4B-13:3 
LNCipedia gene ID: lnc-C2CD4B-13
Location (hg38): chr15:62637172-62645181
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2214 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00023248
Alternative gene names: XLOC_011495; linc-C2CD4B-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.3964 non-coding 
CPAT coding probability 2.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C2CD4B-13:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-625H11.1.1-1:2
3.1 lnc-RP11-625H11.1.1-1:2
4.0 lnc-RP11-625H11.1.1-1:2
4.1 lnc-RP11-625H11.1.1-1:2
5.0 lnc-RP11-625H11.1.1-1:2
5.1 lnc-ICE2-58:3
5.2 lnc-C2CD4B-13:3