Transcript: lnc-C20orf196-2:1

Basic information

LNCipedia transcript ID: lnc-C20orf196-2:1 
LNCipedia gene ID: lnc-C20orf196-2
Location (hg38): chr20:5497279-5512477
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1230 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028493; NONHSAT078375
Alternative gene names: XLOC_013449; linc-C20orf196-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.0688 non-coding 
CPAT coding probability 7.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C20orf196-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf196-1:1
3.1 lnc-C20orf196-2:1
4.0 lnc-C20orf196-2:1
4.1 lnc-C20orf196-2:1
5.0 lnc-C20orf196-2:1
5.1 lnc-PANK2-23:1
5.2 lnc-C20orf196-2:1