Transcript: lnc-C1QTNF9-1:3

Basic information

LNCipedia transcript ID: lnc-C1QTNF9-1:3 
LNCipedia gene ID: lnc-C1QTNF9-1
Location (hg38): chr13:23979810-24034006
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 701 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000439928; ENST00000439928.1; RP11-309I15.1-001; OTTHUMT00000044174.1; NONHSAT032499
Alternative gene names: ENSG00000228741; RP11-309I15.1; ENSG00000228741.1; OTTHUMG00000016574.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -163.5403 non-coding 
CPAT coding probability 22.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C1QTNF9-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPATA13-1:1
3.1 lnc-SPATA13-1:1
4.0 lnc-SPATA13-1:1
4.1 lnc-SPATA13-1:1
5.0 lnc-SPATA13-1:1
5.1 lnc-GTF3A-75:1
5.2 lnc-C1QTNF9-1:3