Transcript: lnc-C1QL4-4:2

Basic information

LNCipedia transcript ID: lnc-C1QL4-4:2 
LNCipedia gene ID: lnc-C1QL4-4
Ensembl Gene ID: ENSG00000258232
Ensembl Transcript ID: ENST00000550468
Location (hg38): chr12:49265156-49273306
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 680 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT028092; ENST00000550468.2
Alternative gene names: ENSG00000258232.2; RP11-161H23.5; AC125611.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 404.9297 coding 
CPAT coding probability 15.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-C1QL4-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1QL4-4:2
4.0 lnc-C1QL4-4:2
4.1 lnc-C1QL4-4:2
5.0 lnc-C1QL4-4:2
5.1 lnc-RACGAP1-19:2
5.2 lnc-C1QL4-4:2