Transcript: lnc-C17orf97-3:2

Basic information

LNCipedia transcript ID: lnc-C17orf97-3:2 
LNCipedia gene ID: lnc-C17orf97-3
Ensembl Gene ID: ENSG00000262061
Ensembl Transcript ID: ENST00000575743
Location (hg38): chr17:331234-333485
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2252 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000575743.1; RP11-1260E13.4-004; OTTHUMT00000436839.1; NONHSAT144692
Alternative gene names: ENSG00000262061.1; RP11-1260E13.4; OTTHUMG00000177419.1; ENSG00000262061.5; AC129507.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.468 non-coding 
CPAT coding probability 21.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C17orf97-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C17orf97-3:2
4.0 lnc-C17orf97-3:2
4.1 lnc-C17orf97-3:2
5.0 lnc-C17orf97-3:2
5.1 lnc-RPA1-62:5
5.2 lnc-C17orf97-3:2