Transcript: lnc-C17orf75-12:1

Basic information

LNCipedia transcript ID: lnc-C17orf75-12:1 
LNCipedia gene ID: lnc-C17orf75-12
Ensembl Gene ID: ENSG00000214708
Ensembl Transcript ID: ENST00000398832
RefSeq ID: NR_136413
Location (hg38): chr17:32141226-32143135
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1599 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000398832.2; NR_136413.1
Alternative gene names: ENSG00000214708.4; AC090616.2; AC116407.1; LOC105371730


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -92.3879 non-coding 
CPAT coding probability 87.75% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-C17orf75-12:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC090616.2.1-6:1
4.1 lnc-AC090616.2.1-6:1
5.0 lnc-AC090616.2.1-6:1
5.1 lnc-SLC6A4-94:1
5.2 lnc-C17orf75-12:1