Transcript: lnc-C17orf53-1:1

Basic information

LNCipedia transcript ID: lnc-C17orf53-1:1 
LNCipedia gene ID: lnc-C17orf53-1
Ensembl Gene ID: ENSG00000267638
Ensembl Transcript ID: ENST00000585899
RefSeq ID: NR_136415
Location (hg38): chr17:44115912-44120595
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 359 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT053902; ENST00000585899.1; NR_136415.1
Alternative gene names: ENSG00000267638.1; RP11-546M21.6; AC023855.1; LOC105371789


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.6859 non-coding 
CPAT coding probability 2.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C17orf53-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C17orf53-1:1
4.0 lnc-C17orf53-1:1
4.1 lnc-C17orf53-1:1
5.0 lnc-C17orf53-1:1
5.1 lnc-DHX8-14:1
5.2 lnc-C17orf53-1:1