Transcript: lnc-C16orf78-5:9

Basic information

LNCipedia transcript ID: lnc-C16orf78-5:9 
LNCipedia gene ID: lnc-C16orf78-5
Ensembl Gene ID: ENSG00000279249
Ensembl Transcript ID: ENST00000643467
Location (hg38): chr16:49282037-49350504
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3326 bp
Exons: 9
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000643467.1
Alternative gene names: ENSG00000279249.2; AC007614.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -54.0464 non-coding 
CPAT coding probability 19.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C16orf78-5:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-ADGRG1-158:2
5.1 lnc-ADGRG1-158:2
5.2 lnc-C16orf78-5:9