Transcript: lnc-C16orf78-5:8

Basic information

LNCipedia transcript ID: lnc-C16orf78-5:8 
LNCipedia gene ID: lnc-C16orf78-5
Location (hg38): chr16:49294886-49296736
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1851 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000569877.2; RP11-491F9.8-001; OTTHUMT00000433113.2; NONHSAT142370
Alternative gene names: ENSG00000259957.2; RP11-491F9.8; OTTHUMG00000176682.2; AC007614.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.3863 non-coding 
CPAT coding probability 7.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C16orf78-5:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C16orf78-4:1
4.0 lnc-C16orf78-4:1
4.1 lnc-C16orf78-5:8
5.0 lnc-C16orf78-5:8
5.1 lnc-ADGRG1-158:14
5.2 lnc-C16orf78-5:8