Transcript: lnc-C16orf78-5:18

Basic information

LNCipedia transcript ID: lnc-C16orf78-5:18 
LNCipedia gene ID: lnc-C16orf78-5
Location (hg38): chr16:49337167-49338993
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1827 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000564048.1; RP11-491F9.5-001; OTTHUMT00000423253.1
Alternative gene names: ENSG00000260769.1; RP11-491F9.5; OTTHUMG00000173486.1; AC007614.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.3479 non-coding 
CPAT coding probability 5.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C16orf78-5:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C16orf78-1:2
4.0 lnc-C16orf78-1:2
4.1 lnc-C16orf78-1:2
5.0 lnc-C16orf78-1:2
5.1 lnc-ADGRG1-158:18
5.2 lnc-C16orf78-5:18