Transcript: lnc-C16orf78-5:15

Basic information

LNCipedia transcript ID: lnc-C16orf78-5:15 
LNCipedia gene ID: lnc-C16orf78-5
Location (hg38): chr16:49335256-49339143
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3888 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT142371; FPKM1_group_11616_transcript_6
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.3479 non-coding 
CPAT coding probability 2.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C16orf78-5:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C16orf78-1:3
4.0 lnc-C16orf78-1:3
4.1 lnc-C16orf78-1:3
5.0 lnc-C16orf78-1:3
5.1 lnc-ADGRG1-158:15
5.2 lnc-C16orf78-5:15