Transcript: lnc-C16orf78-1:6

Basic information

LNCipedia transcript ID: lnc-C16orf78-1:6 
LNCipedia gene ID: lnc-C16orf78-1
Location (hg38): chr16:49163703-49170021
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 301 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00024839
Alternative gene names: XLOC_011713; linc-C16orf78-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -273.5654 non-coding 
CPAT coding probability 0.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C16orf78-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-22D3.1.1-1:2
3.1 lnc-RP11-22D3.1.1-1:2
4.0 lnc-RP11-22D3.1.1-1:2
4.1 lnc-RP11-22D3.1.1-1:2
5.0 lnc-RP11-22D3.1.1-1:2
5.1 lnc-ADGRG1-161:2
5.2 lnc-C16orf78-1:6