Transcript: lnc-C16orf58-5:1

Basic information

LNCipedia transcript ID: lnc-C16orf58-5:1 
LNCipedia gene ID: lnc-C16orf58-5
Ensembl Gene ID: ENSG00000261731
Ensembl Transcript ID: ENST00000569175
Location (hg38): chr16:31709113-31711984
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 441 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569175.2; CTD-2358C21.4-001; OTTHUMT00000432911.2; NONHSAT141959
Alternative gene names: ENSG00000261731.2; CTD-2358C21.4; OTTHUMG00000176630.2; AC074050.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.5703 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C16orf58-5:1 no no no no

Available literature

  1. Zhou (2015), A potential signature of eight long non-coding RNAs predicts survival in patients with non-small cell lung cancer., J Transl Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C16orf58-5:1
4.0 lnc-C16orf58-5:1
4.1 lnc-C16orf58-5:1
5.0 lnc-C16orf58-5:1
5.1 lnc-SULT1A2-123:1
5.2 lnc-C16orf58-5:1