Transcript: lnc-C14orf28-1:2

Basic information

LNCipedia transcript ID: lnc-C14orf28-1:2 
LNCipedia gene ID: lnc-C14orf28-1
Ensembl Gene ID: ENSG00000258747
Ensembl Transcript ID: ENST00000555433
RefSeq ID: NR_135257
Location (hg38): chr14:44507409-44538513
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 379 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000555433.1; RP11-163M18.1-002; OTTHUMT00000410022.1; NR_135257.1
Alternative gene names: ENSG00000258747.1; RP11-163M18.1; OTTHUMG00000170688.1; AL356022.1; LOC105370473


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.9535 non-coding 
CPAT coding probability 0.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C14orf28-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C14orf28-1:2
4.0 lnc-C14orf28-1:2
4.1 lnc-C14orf28-1:2
5.0 lnc-C14orf28-1:2
5.1 lnc-BRMS1L-99:3
5.2 lnc-C14orf28-1:2