Transcript: lnc-C13orf42-1:3

Basic information

LNCipedia transcript ID: lnc-C13orf42-1:3 
LNCipedia gene ID: lnc-C13orf42-1
Location (hg38): chr13:51084124-51172222
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 826 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000569306.1; LINC00371-003; OTTHUMT00000430381.1
Alternative gene names: ENSG00000226792.2; LINC00371; OTTHUMG00000153575.2; ENSG00000226792.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 397.1915 coding 
CPAT coding probability 13.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-C13orf42-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DLEU7-3:2
4.0 LINC00371:3
4.1 LINC00371:3
5.0 LINC00371:3
5.1 lnc-CCDC169-169:3
5.2 lnc-C13orf42-1:3