Transcript: lnc-C10orf143-3:1

Basic information

LNCipedia transcript ID: lnc-C10orf143-3:1 
LNCipedia gene ID: lnc-C10orf143-3
Location (hg38): chr10:130202874-130203128
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 224 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00018070; ENST00000449936; ENST00000449936.1; RP11-500G10.6-001; OTTHUMT00000051029.1; NONHSAT017030
Alternative gene names: XLOC_008995; linc-EBF3-2; ENSG00000237364; RP11-500G10.6; ENSG00000237364.1; OTTHUMG00000019272.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.3933 non-coding 
CPAT coding probability 0.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C10orf143-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EBF3-2:1
3.1 lnc-EBF3-3:1
4.0 lnc-EBF3-3:1
4.1 lnc-EBF3-3:1
5.0 lnc-EBF3-3:1
5.1 lnc-CALY-42:1
5.2 lnc-C10orf143-3:1