Transcript: lnc-BTG3-12:1

Basic information

LNCipedia transcript ID: lnc-BTG3-12:1 
LNCipedia gene ID: lnc-BTG3-12
Ensembl Gene ID: ENSG00000270139
Ensembl Transcript ID: ENST00000602454
Location (hg38): chr21:16417139-16419080
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 467 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT081236; ENST00000602454.1
Alternative gene names: ENSG00000270139.1; AP001172.3; AP001172.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.3639 non-coding 
CPAT coding probability 2.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BTG3-12:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BTG3-12:1
4.0 lnc-BTG3-12:1
4.1 lnc-BTG3-12:1
5.0 lnc-BTG3-12:1
5.1 lnc-N6AMT1-93:1
5.2 lnc-BTG3-12:1