Transcript: lnc-BRINP2-2:1

Basic information

LNCipedia transcript ID: lnc-BRINP2-2:1 
LNCipedia gene ID: lnc-BRINP2-2
Location (hg38): chr1:176508768-176509843
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 521 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000454327.1; RP4-652L8.1-001; OTTHUMT00000084827.1; NONHSAT007779
Alternative gene names: ENSG00000230220.1; RP4-652L8.1; OTTHUMG00000035042.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.8272 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRINP2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM5B-2:1
4.0 lnc-FAM5B-2:1
4.1 lnc-FAM5B-2:1
5.0 lnc-FAM5B-2:1
5.1 lnc-SOAT1-23:1
5.2 lnc-BRINP2-2:1