Transcript: lnc-BRF2-15:1

Basic information

LNCipedia transcript ID: lnc-BRF2-15:1 
LNCipedia gene ID: lnc-BRF2-15
Ensembl Gene ID: ENSG00000253363
Ensembl Transcript ID: ENST00000519451
Location (hg38): chr8:36764954-36779164
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 514 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519451.1; RP11-962G15.1-001; OTTHUMT00000376629.2; NONHSAT126021; FPKM1_group_31183_transcript_1
Alternative gene names: ENSG00000253363.1; RP11-962G15.1; OTTHUMG00000163980.2; ENSG00000253363.5; AC090809.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.1534 non-coding 
CPAT coding probability 6.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRF2-15:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-419C23.1.1-3:1
4.0 lnc-RP11-419C23.1.1-3:1
4.1 lnc-RP11-419C23.1.1-3:1
5.0 lnc-RP11-419C23.1.1-3:1
5.1 lnc-C8orf86-57:1
5.2 lnc-BRF2-15:1