Transcript: lnc-BRF1-9:2

Basic information

LNCipedia transcript ID: lnc-BRF1-9:2 
LNCipedia gene ID: lnc-BRF1-9
Ensembl Gene ID: ENSG00000253364
Ensembl Transcript ID: ENST00000497397
Location (hg38): chr14:105647924-105649057
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 548 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000497397; ENST00000497397.1; RP11-731F5.2-001; OTTHUMT00000380292.1; NONHSAT040391
Alternative gene names: ENSG00000253364; RP11-731F5.2; ENSG00000253364.1; OTTHUMG00000164792.1; ENSG00000253364.2; AL928742.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.224 non-coding 
CPAT coding probability 14.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRF1-9:2 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL901608.1-2:1
3.1 lnc-AL901608.1-2:1
4.0 lnc-AL901608.1-3:38
4.1 lnc-AL901608.1-3:38
5.0 lnc-AL901608.1-3:38
5.1 lnc-AKT1-33:2
5.2 lnc-BRF1-9:2