Transcript: lnc-BRF1-31:2

Basic information

LNCipedia transcript ID: lnc-BRF1-31:2 
LNCipedia gene ID: lnc-BRF1-31
Location (hg38): chr14:105865222-106810663
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 263 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT040439
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.6256 non-coding 
CPAT coding probability 38.43% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BRF1-31:2 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL901608.1-3:9
4.0 lnc-AL901608.1-3:9
4.1 lnc-AL901608.1-3:9
5.0 lnc-AL901608.1-3:9
5.1 lnc-AKT1-89:2
5.2 lnc-BRF1-31:2