Transcript: lnc-BRF1-1:2

Basic information

LNCipedia transcript ID: lnc-BRF1-1:2 
LNCipedia gene ID: lnc-BRF1-1
Ensembl Gene ID: ENSG00000251602
Ensembl Transcript ID: ENST00000551271
Location (hg38): chr14:105416884-105419739
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2279 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551271; ENST00000551271.1; RP11-521B24.3-002; OTTHUMT00000409066.1; NONHSAT040346; ENST00000551271.5
Alternative gene names: ENSG00000251602; RP11-521B24.3; ENSG00000251602.2; OTTHUMG00000170424.1; ENSG00000251602.6; AL928654.2; AL928654.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.8527 non-coding 
CPAT coding probability 6.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRF1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BRF1-1:2
3.1 lnc-BRF1-1:2
4.0 lnc-BRF1-1:2
4.1 lnc-BRF1-1:2
5.0 lnc-BRF1-1:2
5.1 lnc-AKT1-24:2
5.2 lnc-BRF1-1:2