Transcript: lnc-BRD3-1:6

Basic information

LNCipedia transcript ID: lnc-BRD3-1:6 
LNCipedia gene ID: lnc-BRD3-1
Location (hg38): chr9:134133866-134135972
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1846 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000273249.1|HBMT00001496412.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 24.728 non-coding 
CPAT coding probability 45.40% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BRD3-1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-BRD3-1:6
5.0 lnc-BRD3-1:6
5.1 lnc-SURF1-20:2
5.2 lnc-BRD3-1:6