Transcript: lnc-BRD3-1:1

Basic information

LNCipedia transcript ID: lnc-BRD3-1:1 
LNCipedia gene ID: lnc-BRD3-1
Location (hg38): chr9:134134085-134135915
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1570 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016500; NONHSAT135376
Alternative gene names: XLOC_007882; linc-BRD3-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.728 non-coding 
CPAT coding probability 62.96% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BRD3-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BRD3-1:1
3.1 lnc-BRD3-1:1
4.0 lnc-BRD3-1:1
4.1 lnc-BRD3-1:1
5.0 lnc-BRD3-1:1
5.1 lnc-SURF1-20:4
5.2 lnc-BRD3-1:1