Transcript: lnc-BRD1-4:1

Basic information

LNCipedia transcript ID: lnc-BRD1-4:1 
LNCipedia gene ID: lnc-BRD1-4
Ensembl Gene ID: ENSG00000213279
Ensembl Transcript ID: ENST00000393264
Location (hg38): chr22:49572264-49575426
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2379 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000393264.2; RP1-29C18.9-001; OTTHUMT00000317429.1; NONHSAT087405
Alternative gene names: ENSG00000213279.2; RP1-29C18.9; OTTHUMG00000150298.1; Z97192.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.4849 non-coding 
CPAT coding probability 97.45% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BRD1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BRD1-4:1
4.0 lnc-BRD1-4:1
4.1 lnc-BRD1-4:1
5.0 lnc-BRD1-4:1
5.1 lnc-BRD1-12:1
5.2 lnc-BRD1-4:1