Transcript: lnc-BRD1-29:5

Basic information

LNCipedia transcript ID: lnc-BRD1-29:5 
LNCipedia gene ID: lnc-BRD1-29
Location (hg38): chr22:48488159-48489324
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1166 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000058866.1|FTMT28600001486.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -104.7375 non-coding 
CPAT coding probability 7.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRD1-29:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CTA-299D3.8.1-1:5
5.0 lnc-CTA-299D3.8.1-1:5
5.1 lnc-BRD1-20:5
5.2 lnc-BRD1-29:5